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1.
Chempluschem ; : e202300492, 2024 Jan 24.
Artigo em Inglês | MEDLINE | ID: mdl-38264807

RESUMO

At the origin, the emergence of proteins was based on crucial prebiotic stages in which simple amino acids-based building blocks spontaneously evolved from the prebiotic soup into random proto-polymers called protoproteins. Despite advances in modern peptide synthesis, these prebiotic chemical routes to protoproteins remain puzzling. We discuss in this perspective how polymer science and systems chemistry are reaching a point of convergence in which simple monomers called N-carboxyanhydrides would be able to form such protoproteins via the emergence of a protometabolic cycle involving aqueous polymerization and featuring macromolecular Darwinism behavior.

2.
Membranes (Basel) ; 13(11)2023 Nov 01.
Artigo em Inglês | MEDLINE | ID: mdl-37999355

RESUMO

The lack of information on structural basis where proteins are involved, as well as the biomineralization processes of different systems such as bones, diatom frustules, and eggshells, have intrigued scientists from different fields for decades. This scientific curiosity has led to the use of methodologies that help understand the mechanism involved in the formation of these complex structures. Therefore, this work focuses on the use of eggshell membranes from different species of ratites (emu and ostrich) and reptiles (two species of crocodiles) as a model to differentiate biocalcification and biosilicification by introducing calcium phosphate or silica inside the membrane fiber mantles. We performed this to obtain information about the process of eggshell formation as well as the changes that occur in the membrane during crystal formation. In order to identify and understand the early processes leading to the formation of the microstructures present in the eggshell, we decided to carry out the synthesis of silica-carbonate of calcium, barium, and strontium called biomorph in the presence of intramineral proteins. This was carried out to evaluate the influence of these proteins on the formation of specific structures. We found that the proteins on untreated membranes, present a structural growth similar to those observed in the inner part of the eggshell, while in treated membranes, the structures formed present a high similarity with those observed in the outer and intermediate part of the eggshell. Finally, a topographic and molecular analysis of the biomorphs and membranes was performed by scanning electron microscopy (SEM), Raman and Fourier-transform Infrared (FTIR) spectroscopies.

3.
Biomedicines ; 11(2)2023 Feb 08.
Artigo em Inglês | MEDLINE | ID: mdl-36831031

RESUMO

BACKGROUND: M1 macrophages involved in pro-inflammatory processes can be induced by low-density lipoproteins (LDL), giving rise to foam cells. In the atheroma plaque, it has been identified that males present more advanced lesions associated with infiltration. Therefore, our study aims to investigate sex-related changes in the transcriptome of M1 macrophages during the internalization process of LDL particles. METHODS: Peripheral blood mononuclear cells (PBMCs) from healthy male and female subjects were separated using Hystopaque, and monocytes were isolated from PBMCs using a positive selection of CD14+ cells. Cells were stimulated with LDL 10 µg/mL, and the transcriptional profile of M1 macrophages performed during LDL internalization was determined using a Clariom D platform array. RESULTS: Chromosome Y influences the immune system and inflammatory responses in males expressing 43% of transcripts in response to LDL treatment. Males and females share 15 transcripts, where most correspond to non-coding elements involved in oxidative stress and endothelial damage. CONCLUSIONS: During LDL internalization, male monocyte-derived M1 macrophages display more marked proinflammatory gene expression. In contrast, female M1 macrophages display a more significant number of markers associated with cell damage.

4.
Astrobiology ; 23(1): 33-42, 2023 01.
Artigo em Inglês | MEDLINE | ID: mdl-36257639

RESUMO

The mineral reaction pathways that yield organic compounds of increasing complexity would have required a means of protective screening against strong ultraviolet radiation for macromolecular assembly on early Earth. In this study, a bacterial chromosomal plasmid DNA was used as a model biomolecule that represents a complex polymeric nucleic acid containing genetic information. The plasmid DNA was exposed to UV radiation through a medium containing air, water, iron (Fe3+), or silica-iron rich aqueous solutions. Our results demonstrate that the plasmid DNA underwent covalent breakage in an aqueous solution when exposed to UV radiation but was shielded against damage due to the presence of iron and silica. It is demonstrated that a suspension of ca. 40 nm colloidal particles of silica gel embedded with Fe3+ ions adsorbed on silanol groups that formed nanoclusters of noncrystalline iron hydroxide is an extremely efficient shelter against intense UV radiation. The implications for our understanding of primitive Earth and Earth-like planets, moons, and asteroids are discussed. The stability of a chromosomal DNA molecule against UV radiation in the presence of iron and silica may provide support on how macromolecules endured early Earth environments and brought forth important implications on early molecular survival against UV radiation.


Assuntos
Ferro , Dióxido de Silício , Raios Ultravioleta , Água/química , DNA Bacteriano , DNA , Biologia
5.
ACS Omega ; 7(42): 37410-37426, 2022 Oct 25.
Artigo em Inglês | MEDLINE | ID: mdl-36312347

RESUMO

The origin of life on Earth is associated with the Precambrian era, in which the existence of a large diversity of microbial fossils has been demonstrated. Notwithstanding, despite existing evidence of the emergence of life many unsolved questions remain. The first question could be as follows: Which was the inorganic structure that allowed isolation and conservation of the first biomolecules in the existing reduced conditions of the primigenial era? Minerals have been postulated as the ones in charge of protecting theses biomolecules against the external environment. There are calcium, barium, or strontium silica-carbonates, called biomorphs, which we propose as being one of the first inorganic structures in which biomolecules were protected from the external medium. Biomorphs are structures with different biological morphologies that are not formed by cells, but by nanocrystals; some of their morphologies resemble the microfossils found in Precambrian cherts. Even though biomorphs are unknown structures in the geological registry, their similarity with some biological forms, including some Apex fossils, could suggest them as the first "inorganic scaffold" where the first biomolecules became concentrated, conserved, aligned, and duplicated to give rise to the pioneering cell. However, it has not been documented whether biomorphs could have been the primary structures that conserved biomolecules in the Precambrian era. To attain a better understanding on whether biomorphs could have been the inorganic scaffold that existed in the primigenial Earth, the aim of this contribution is to synthesize calcium, barium, and strontium biomorphs in the presence of genomic DNA from organisms of the five kingdoms in conditions emulating the atmosphere of the Precambrian era and that CO2 concentration in conditions emulating current atmospheric conditions. Our results showed, for the first time, the formation of the kerogen signal, which is a marker of biogenicity in fossils, in the biomorphs grown in the presence of DNA. We also found the DNA to be internalized into the structure of biomorphs.

6.
Int J Mol Sci ; 22(24)2021 Dec 13.
Artigo em Inglês | MEDLINE | ID: mdl-34948188

RESUMO

Human serum transferrin (Tf) is a bilobed glycoprotein whose function is to transport iron through receptor-mediated endocytosis. The mechanism for iron release is pH-dependent and involves conformational changes in the protein, thus making it an attractive system for possible biomedical applications. In this contribution, two powerful X-ray techniques, namely Macromolecular X-ray Crystallography (MX) and Small Angle X-ray Scattering (SAXS), were used to study the conformational changes of iron-free (apo) and iron-loaded (holo) transferrin in crystal and solution states, respectively, at three different pH values of physiological relevance. A crystallographic model of glycosylated apo-Tf was obtained at 3.0 Å resolution, which did not resolve further despite many efforts to improve crystal quality. In the solution, apo-Tf remained mostly globular in all the pH conditions tested; however, the co-existence of closed, partially open, and open conformations was observed for holo-Tf, which showed a more elongated and flexible shape overall.


Assuntos
Transferrina/ultraestrutura , Sítios de Ligação/fisiologia , Cristalografia por Raios X/métodos , Glicosilação , Humanos , Concentração de Íons de Hidrogênio , Ferro/metabolismo , Modelos Moleculares , Ligação Proteica/fisiologia , Conformação Proteica , Espalhamento a Baixo Ângulo , Soro/química , Soro/metabolismo , Transferrina/metabolismo , Difração de Raios X
7.
ACS Omega ; 6(11): 7887-7895, 2021 Mar 23.
Artigo em Inglês | MEDLINE | ID: mdl-33778300

RESUMO

In this work, we present an investigation of the surface area and roughness of different dinosaur eggshells of 70 million years old using fractal dimension analysis obtained from atomic force microscopy (AFM) and scanning electron microscopy (SEM) information. We also conduct qualitative analyses on the external and inner surfaces of eggshells, which are mainly composed of calcium carbonate. The morphological characteristics of both surfaces can be revealed by both SEM and AFM techniques. It is observed that the inner surface of the eggshell has greater roughness that increases the surface area due to the vaster number of pores compared to the external face, making, therefore, the fractal dimension also greater. The aim of this contribution is to identify the morphology of the pores, as well as the external and inner surfaces of the eggshells, since the morphology is very similar on both surfaces and will otherwise be difficult to determine with the naked eye by SEM and AFM. In addition, the sole AFM analysis is very complicated for these types of samples due to the intrinsic roughness. However, it needs additional methods or strategies to complete this purpose. This contribution used the fractal dimension to show the same behavior obtained in both SEM and AFM techniques, indicating the fractal nature of the structures.

8.
ACS Omega ; 5(40): 25936-25946, 2020 Oct 13.
Artigo em Inglês | MEDLINE | ID: mdl-33073120

RESUMO

This work presents a detailed structural and morphological analysis of different dinosaur eggshells such as Spheroolithus (sample 1, 2), lambeosaurinae, Prismatoolithus, and one unidentified ootaxon performed by high-resolution scanning electron microscopy (HRSEM). These ancient eggshells of Late Cretaceous dinosaurs were collected in the coastal area of El Rosario, Baja California in Mexico. Additionally, a thorough study was performed on the elements present in the samples by different techniques such as energy-dispersive spectroscopy (EDS), X-ray fluorescence (XRF), and X-ray photoelectron spectroscopy (XPS). The XPS technique was performed to make an accurate identification of the compounds of two different types of eggshells (Spheroolithus sample 1 and Prismatoolithus). This contribution compares the surface of five different dinosaur eggshells of 74 Ma and their inner section to determine the morphology, distribution of the chemical elements present, as well as their relationship. The observed morphology of the ornithopod eggshells of the herbivorous species shows that the mammillary cones are in the form of columns with microaggregates and irregular pores. In contrast, in the theropod eggshells, the mammillary cones are observed in different forms with wider pores. Finally, the chemical components present in the structures of each of the samples were estimated using the information obtained from SEM-EDS, evidencing the presence of calcite, quartz, and albite in each of the samples. The composition reveals that eggshells contain Si, P, S, K, Ca, Mn, Fe, and Sr and trace elements such as Cr, Cu, and Zn. The presence of heavy metals may be an indication that the eggshells presented diagenetic alterations.

9.
ACS Omega ; 5(10): 5460-5469, 2020 Mar 17.
Artigo em Inglês | MEDLINE | ID: mdl-32201838

RESUMO

Since Earth was formed, in the Precambrian era up until our present days, electric current has participated in the morphology and chemical composition of organic and inorganic structures. Attempting to elucidate the mechanism by which electric current participated in the creation of the first cell in the Precambrian era is an intriguing and of a permanent subject of interest to be studied. One way of emulating the formation of structures similar to those that might have existed in the Precambrian era in the presence of a biomolecule and an electric current source is to use as a model, the silica-carbonate of alkaline earth metal compounds known as biomorphs. The objective of this work was to assess the influence exerted by an electric current (negatively or positively charged indium tin oxide electrodes) on the formation of biomorphs in the presence of RNA. The compounds obtained under both electric charges were visualized through scanning electron microscopy (SEM), and their chemical composition was analyzed through Raman spectroscopy. The biomorphs obtained under a positive electric current correspond to aragonite-type BaCO3(I) and calcite-type BaCO3(II). Whereas, under a negative current, carbon graphite and aragonite-type BaCO3(I) were obtained. To the best of our knowledge, this is the first evidence showing that the presence of RNA and the electric current is fundamental in the rearrangement of atoms, suggesting that organic and inorganic compounds have coexisted since the primitive era.

10.
Rev. iberoam. micol ; 36(3): 120-128, jul.-sept. 2019. ilus, tab, graf
Artigo em Inglês | IBECS | ID: ibc-191400

RESUMO

Background: In the last three decades the species of Candida have been of great interest due to the high mortality rates that they cause in immunocompromised and hospitalized patients. These species are opportunistic pathogens and they have inhabited other environments long before colonizing human cells. Among these environments we find wastewater from mines, and water from aquifers and soils that contain high concentrations of precious metals as well as toxic and base metals. Aims: The aim of this study was to assess whether Candida albicans and Candida glabrata are able to maintain homeostasis in the presence of zinc, copper, cobalt or silver. Methods: To achieve the objective, each of the Candida species was exposed to every single metal individually in a salt solution. Subsequently the treated cells were lysed to evaluate the compounds formed by means of Scanning Electron Microscopy-Energy Dispersive X-ray spectroscopy (SEM-EDS). Results: When analyzing the compounds that both C. albicans and C. glabrata formed in the presence of each of the metals, we found that they had synthesized silver sulfide (Ag2S), cobalt sulfate (CoSO4), zinc phosphate (Zn3(PO4)2), or copper oxide (CuO). Conclusions: Our results indicate that both C. albicans and C. glabrata have enzymatic and non-enzymatic mechanisms that allow them to achieve homeostasis in a different specific manner for each of the single metals to which they were exposed. To our knowledge, this is the first work reporting that C. albicans and C. glabrata can reduce different metals, with the subsequent formation of sulfides, sulfates, phosphates and oxides. This ability, developed over time by these Candida species, is probably a kind of biochemical mechanism in order to survive and colonize many different environments, from water or soil to humans. For this reason, C. albicans and C. glabrata make up an excellent model of study, both from a medical and biotechnical point of view


Antecedentes: Las especies de Candida han cobrado gran interés en las últimas tres décadas debido a los altos índices de mortalidad que ocasionan en pacientes inmunodeficientes y hospitalizados. Estas especies son consideradas patógenas oportunistas y existen otros medios ambientes que estas levaduras han habitado mucho antes de haber colonizado al ser humano: aguas residuales de minas, agua de mantos acuíferos y suelos que contienen altas concentraciones de metales preciosos, metales tóxicos y metales comunes. Objetivos: El objetivo del presente trabajo fue evaluar si Candida albicans y Candida glabrata eran capaces de mantener la homeostasis en presencia de los elementos químicos cinc, cobre, cobalto y plata. Métodos: Para lograr el objetivo, las dos levaduras fueron expuestas a cada uno de los metales elegidos de manera independiente, y posteriormente las células tratadas fueron lisadas para permitir la evaluación por medio de microscopía electrónica de barrido con espectrometría de dispersión de energía de rayos X (SEM-EDS) del compuesto formado. Resultados: Al analizar los compuestos que tanto C. albicans como C. glabrata formaron en presencia de cada metal, se encontró que habían sintetizado sulfuro de plata (Ag2S), sulfato de cobalto (CoSO4), fosfato de cinc (Zn3(PO4)2), u óxido de cobre (CuO). Conclusiones: Nuestros resultados indican que tanto C. albicans como C. glabrata poseen mecanismos enzimáticos y no enzimáticos que les permiten alcanzar una homeostasis de manera específica para cada metal al que son expuestas. A nuestro entendimiento este es el primer trabajo que documenta que C. albicans y C. glabrata pueden reducir distintos metales, con la subsecuente formación de sulfuros, sulfatos, fosfatos y óxidos. Esta habilidad que pudieron desarrollar a lo largo del tiempo estas especies de Candida para poder sobrevivir y colonizar medios ambientes tan diferentes, que van desde el agua o los suelos hasta el ser humano, las convierte en un excelente modelo de estudio, tanto desde el punto de vista médico como biotecnológico


Assuntos
Humanos , Candida albicans/efeitos dos fármacos , Candida glabrata/efeitos dos fármacos , Zinco/farmacocinética , Cobalto/farmacocinética , Prata/farmacocinética , Cobre/farmacocinética , Homeostase/efeitos dos fármacos , Microscopia Eletrônica de Varredura/métodos , Espectrometria por Raios X/métodos , Técnicas In Vitro/métodos
11.
Rev Iberoam Micol ; 36(3): 120-128, 2019.
Artigo em Inglês | MEDLINE | ID: mdl-31443947

RESUMO

BACKGROUND: In the last three decades the species of Candida have been of great interest due to the high mortality rates that they cause in immunocompromised and hospitalized patients. These species are opportunistic pathogens and they have inhabited other environments long before colonizing human cells. Among these environments we find wastewater from mines, and water from aquifers and soils that contain high concentrations of precious metals as well as toxic and base metals. AIMS: The aim of this study was to assess whether Candida albicans and Candida glabrata are able to maintain homeostasis in the presence of zinc, copper, cobalt or silver. METHODS: To achieve the objective, each of the Candida species was exposed to every single metal individually in a salt solution. Subsequently the treated cells were lysed to evaluate the compounds formed by means of Scanning Electron Microscopy-Energy Dispersive X-ray spectroscopy (SEM-EDS). RESULTS: When analyzing the compounds that both C. albicans and C. glabrata formed in the presence of each of the metals, we found that they had synthesized silver sulfide (Ag2S), cobalt sulfate (CoSO4), zinc phosphate (Zn3(PO4)2), or copper oxide (CuO). CONCLUSIONS: Our results indicate that both C. albicans and C. glabrata have enzymatic and non-enzymatic mechanisms that allow them to achieve homeostasis in a different specific manner for each of the single metals to which they were exposed. To our knowledge, this is the first work reporting that C. albicans and C. glabrata can reduce different metals, with the subsequent formation of sulfides, sulfates, phosphates and oxides. This ability, developed over time by these Candida species, is probably a kind of biochemical mechanism in order to survive and colonize many different environments, from water or soil to humans. For this reason, C. albicans and C. glabrata make up an excellent model of study, both from a medical and biotechnical point of view.


Assuntos
Candida albicans/metabolismo , Candida glabrata/metabolismo , Cobalto/metabolismo , Cobre/metabolismo , Prata/metabolismo , Zinco/metabolismo , Homeostase , Fosfatos/metabolismo , Compostos de Prata/metabolismo , Compostos de Zinco/metabolismo
12.
Microb Biotechnol ; 12(6): 1164-1179, 2019 11.
Artigo em Inglês | MEDLINE | ID: mdl-30618130

RESUMO

The aim of the present work was to evaluate whether Candida species can reduce both precious and toxic pure metals from the respective molecular ions. From these results, the nanoparticles formed were studied using scanning electron microscopy with energy-dispersive spectroscopy, Raman spectroscopy, X-ray fluorescence spectroscopy and synchrotron radiation. Our results showed that the metal ions were reduced to their corresponding metallic nanoconglomerate or nanoparticles by Candida species. This is the first report on how yeasts of this genus are capable of achieving homeostasis (resilience) in the presence of metal ions of both precious and toxic metals by reducing them to a metallic state.


Assuntos
Candida/metabolismo , Metais Pesados/metabolismo , Estresse Oxidativo , Biotransformação , Microscopia Eletrônica de Varredura , Nanopartículas/metabolismo , Oxirredução , Análise Espectral
13.
Microb Pathog ; 124: 21-29, 2018 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-30118801

RESUMO

In recent years, C. albicans and C. glabrata have been identified as the main cause of candidemia and invasive candidiasis in hospitalized and immunocompromised patients. In order to colonize the human host, these fungi express several virulence factors such as the response to oxidative stress and the formation of biofilms. In the expression of these virulence factors, the cell wall of C. albicans and C. glabrata is of fundamental importance. As the outermost structure of the yeast, the cell wall is the first to come in contact with the reactive oxygen species (ROS) generated during the respiratory outbreak, and in the formation of biofilms, it is the first to adhere to organs or medical devices implanted in the human host. In both processes, several cell wall proteins (CWP) are required, since they promote attachment to human cells or abiotic surfaces, as well as to detoxify ROS. In our working group we have identified moonlighting CWP in response to oxidative stress as well as in the formation of biofilms. Having identified moonlighting CWP in Candida species in response to two virulence factors indicates that these proteins may possibly be immunodominant. The aim of the present work was to evaluate whether proteins of this type such as fructose-bisphosphate aldolase (Fba1), phosphoglycerate kinase (Pgk) and pyruvate kinase (Pk), could confer protection in a mouse model against C. albicans and C. glabrata. For this, recombinant proteins His6-Fba1, His6-Pgk and His6-Pk were constructed and used to immunize several groups of mice. The immunized mice were infected with C. albicans or C. glabrata, and subsequently the liver, spleen and kidney were extracted and the number of CFU was determined. Our results showed that Pk confers immunity to mice against C. albicans, while Fba1 to C. glabrata. This data allows us to conclude that the moonlighting CWP, Fba1 and Pk confer in vivo protection in a specific way against each species of Candida. This makes them promising candidates for developing specific vaccines against these pathogens.


Assuntos
Candidíase/prevenção & controle , Frutose-Bifosfato Aldolase/imunologia , Proteínas Fúngicas/imunologia , Vacinas Fúngicas/imunologia , Fosfoglicerato Quinase/imunologia , Piruvato Quinase/imunologia , Animais , Candida albicans/imunologia , Candida glabrata/imunologia , Candidíase/imunologia , Contagem de Colônia Microbiana , Modelos Animais de Doenças , Frutose-Bifosfato Aldolase/administração & dosagem , Proteínas Fúngicas/administração & dosagem , Vacinas Fúngicas/administração & dosagem , Rim/microbiologia , Fígado/microbiologia , Camundongos , Fosfoglicerato Quinase/administração & dosagem , Piruvato Quinase/administração & dosagem , Baço/microbiologia , Vacinas Sintéticas/administração & dosagem , Vacinas Sintéticas/imunologia
14.
Methods Mol Biol ; 1607: 51-76, 2017.
Artigo em Inglês | MEDLINE | ID: mdl-28573569

RESUMO

This chapter provides a review of different advanced methods that help to increase the success rate of a crystallization project, by producing larger and higher quality single crystals for determination of macromolecular structures by crystallographic methods. For this purpose, the chapter is divided into three parts. The first part deals with the fundamentals for understanding the crystallization process through different strategies based on physical and chemical approaches. The second part presents new approaches involved in more sophisticated methods not only for growing protein crystals but also for controlling the size and orientation of crystals through utilization of electromagnetic fields and other advanced techniques. The last section deals with three different aspects: the importance of microgravity, the use of ligands to stabilize proteins, and the use of microfluidics to obtain protein crystals. All these advanced methods will allow the readers to obtain suitable crystalline samples for high-resolution X-ray and neutron crystallography.


Assuntos
Cristalização/métodos , Cristalografia/métodos , Microfluídica/métodos , Proteínas/ultraestrutura , Sefarose/química , Sulfato de Amônio/química , Precipitação Química , Cristalografia/instrumentação , Campos Eletromagnéticos , Géis , Microfluídica/instrumentação , Difração de Nêutrons , Polietilenoglicóis/química , Proteínas/química , Solubilidade , Ausência de Peso , Difração de Raios X
15.
Microb Biotechnol ; 10(2): 405-424, 2017 03.
Artigo em Inglês | MEDLINE | ID: mdl-28093869

RESUMO

Nature produces biominerals (biogenic minerals) that are synthesized as complex structures, in terms of their physicochemical properties. These biominerals are composed of minerals and biological macromolecules. They are produced by living organisms and are usually formed through a combination of chemical, biochemical and biophysical processes. Microorganisms like Candida in the presence of heavy metals can biomineralize those metals to form microcrystals (MCs) and nanocrystals (NCs). In this work, MCs and NCs of PbS, HgS or HgCl2 as well as CdS are synthesized both in vitro (gels) and in vivo by four Candida species. Our in vivo results show that, in the presence of Pb2+ , Candida cells are able to replicate and form extracellular PbS MCs, whereas in the presence of Hg2+ and Cd2+ , they did synthesize intercellular MCs from HgS or HgCl2 and CdS NCs respectively. The MCs and NCs biologically obtained in Candida were compared with those PbS, HgS and CdS crystals synthetically obtained in vitro through the gel method (grown either in agarose or in sodium metasilicate hydrogels). This is, to our knowledge, the first time that the biosynthesis of the various MCs and NCs (presented in several species of Candida) has been reported. This biosynthesis is differentially regulated in each of these pathogens, which allows them to adapt and survive in different physiological and environmental habitats.


Assuntos
Cádmio/metabolismo , Candida/metabolismo , Cristalização , Chumbo/metabolismo , Mercúrio/metabolismo , Nanopartículas/metabolismo , Sulfetos/metabolismo
16.
Appl Biochem Biotechnol ; 180(6): 1056-1075, 2016 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-27295039

RESUMO

ß-Fructosidase, a glycoside hydrolase of a biotechnologically important strain, was studied for its biochemical, physicochemical, and three-dimensional structure characteristics. This enzyme was heterologously expressed in Escherichia coli as a C-terminal His-tagged protein (SacB). ß-Fructosidase catalyzes the cleavage of glycoside bonds toward certain carbohydrates with ß-fructofuranosyl linkages; however, SacB exhibited selectivity toward sucrose and an optimum activity at pH 6.0-6.5 and 37 °C. In such optimum enzymatic activity conditions, the SacB was commonly observed as a monodisperse protein by dynamic light scattering (DLS). As ß-fructosidase belongs to glycoside hydrolase family 32 (GH32), a ß-sandwich and a five-bladed ß-propeller domain are typical predicted folds in its structure. Docking and molecular dynamic simulations revealed for the first time a funnel-like channel perfectly exposed in the ß-propeller domain of the Lactobacillus plantarum ß-fructosidase (this allows the interaction between its entire catalytic triad and substrates that are larger than sucrose). In contrast, SacB showed a closed central tunnel collaterally induced by its His-tag.


Assuntos
Domínio Catalítico , Lactobacillus plantarum/enzimologia , beta-Frutofuranosidase/química , beta-Frutofuranosidase/metabolismo , Sequência de Aminoácidos , Cromatografia em Camada Delgada , Clonagem Molecular , Genes Bacterianos , Concentração de Íons de Hidrogênio , Hidrólise , Cinética , Lactobacillus plantarum/genética , Simulação de Acoplamento Molecular , Simulação de Dinâmica Molecular , Peso Molecular , Peptídeos/química , Proteínas Recombinantes/metabolismo , Espalhamento de Radiação , Análise de Sequência de Proteína , Relação Estrutura-Atividade , Especificidade por Substrato , Sacarose/metabolismo , Temperatura
17.
Food Chem ; 192: 203-11, 2016 Feb 01.
Artigo em Inglês | MEDLINE | ID: mdl-26304339

RESUMO

Chan (Hyptis suaveolens) is a Mesoamerican crop highly appreciated since the pre-Hispanic cultures. Its proteins are a good source of essential amino acids; however, there are no reports on the properties of its individual proteins. In this study, the 11S globulin (Hs11S) was purified and biochemically characterized. The molecular weight of native Hs11S was about 150-300 kDa with isoelectric points of 5.0-5.3, composed by four monomers of 53.5, 52, 51.1 and 49.5 kDa, each formed by one acidic subunit and one basic subunit linked by a disulfide bond. Dynamic light scattering, size exclusion chromatography and native PAGE show that Hs11S is assembled in different oligomeric forms. LC-MS/MS analysis confirmed its identity. Hs11S presents antigenic determinants in common with lupin 11S globulin. Carbohydrate moieties or phosphate groups linked to Hs11S were not detected. This information is very useful in order to exploit and utilize rationally chan 11S globulin in food systems.


Assuntos
Globulinas/isolamento & purificação , Hyptis/química , Proteínas de Armazenamento de Sementes/isolamento & purificação , Sementes/química , Eletroforese em Gel de Poliacrilamida , Ponto Isoelétrico , Peso Molecular , Espectrometria de Massas em Tandem
18.
Acta Crystallogr D Biol Crystallogr ; 71(Pt 4): 809-18, 2015 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-25849392

RESUMO

Biomineralization is the process by which living organisms produce minerals. One remarkable example is the formation of eggshells in birds. Struthiocalcins present in the ostrich (Struthio camellus) eggshell matrix act as biosensors of calcite growth during eggshell formation. Here, the crystal structure of struthiocalcin-1 (SCA-1) is reported in two different crystal forms. The structure is a compact single domain with an α/ß fold characteristic of the C-type lectin family. In contrast to the related avian ovocleidin OC17, the electrostatic potential on the molecular surface is dominated by an acidic patch. Scanning electron microscopy combined with Raman spectroscopy indicates that these intramineral proteins (SCA-1 and SCA-2) induce calcium carbonate precipitation, leading to the formation of a stable form of calcite in the mature eggshell. Finally, the implications of these two intramineral proteins SCA-1 and SCA-2 in the nucleation of calcite during the formation of eggshells in ratite birds are discussed.


Assuntos
Casca de Ovo/química , Proteínas/química , Struthioniformes , Sequência de Aminoácidos , Animais , Carbonato de Cálcio/química , Cristalografia por Raios X , Modelos Moleculares , Dados de Sequência Molecular , Conformação Proteica , Proteínas/isolamento & purificação , Alinhamento de Sequência , Struthioniformes/metabolismo
19.
Mol Cell Biochem ; 393(1-2): 99-109, 2014 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-24748322

RESUMO

The structure of apolipoprotein A-I (apoA-I), the major protein of HDL, has been extensively studied in past years. Nevertheless, its corresponding three-dimensional structure has been difficult to obtain due to the frequent conformational changes observed depending on the microenvironment. Although the function of each helical segment of this protein remains unclear, it has been observed that the apoA-I amino (N) and carboxy-end (C) domains are directly involved in receptor-recognition, processes that determine the diameter for HDL particles. In addition, it has been observed that the high structural plasticity of these segments might be related to several amyloidogenic processes. In this work, we studied a series of peptides derived from the N- and C-terminal domains representing the most hydrophobic segments of apoA-I. Measurements carried out using circular dichroism in all tested peptides evidenced that the lipid environment promotes the formation of α-helical structures, whereas an aqueous environment facilitates a strong tendency to adopt ß-sheet/disordered conformations. Electron microscopy observations showed the formation of amyloid-like structures similar to those found in other well-defined amyloidogenic proteins. Interestingly, when the apoA-I peptides were incubated under conditions that promote stable globular structures, two of the peptides studied were cytotoxic to microglia and mouse macrophage cells. Our findings provide an insight into the physicochemical properties of key segments contained in apoA-I which may be implicated in disorder-to-order transitions that in turn maintain the delicate equilibrium between both, native and abnormal conformations, and therefore control its propensity to become involved in pathological processes.


Assuntos
Proteínas Amiloidogênicas/química , Apolipoproteína A-I/química , Peptídeos/química , Conformação Proteica , Sequência de Aminoácidos , Animais , Dicroísmo Circular , Lipídeos/química , Camundongos , Estrutura Secundária de Proteína , Estrutura Terciária de Proteína
20.
J Appl Crystallogr ; 46(Pt 3): 832-834, 2013 Jun 01.
Artigo em Inglês | MEDLINE | ID: mdl-23682197

RESUMO

A new easy-to-use device has been designed and implemented for electric field-induced protein crystallization in a vapor-diffusion configuration. The device not only controls crystal nucleation by means of the electrical current, but also favors crystal growth owing to its vapor-diffusion setup. Crystallization was conducted in the presence of an internal electric field and direct current. The proteins investigated were lysozyme, as model protein, and 2TEL-lysozyme (a synthetic protein consisting of two tandem alpha helix motifs connected to a lysozyme moiety). Lysozyme crystals that grew attached to the cathode were larger than those grown attached to the anode or in the absence of an electric current. On the other hand, crystals of 2TEL-lysozyme qualitatively showed a better X-ray diffraction pattern when grown in the presence of an electric current.

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